NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181590_10053306

Scaffold Ga0181590_10053306


Overview

Basic Information
Taxon OID3300017967 Open in IMG/M
Scaffold IDGa0181590_10053306 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3224
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015477Metagenome / Metatranscriptome254Y
F017488Metagenome / Metatranscriptome240Y
F030452Metagenome / Metatranscriptome185Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0181590_100533063F017488GAGGMAFITDGGGNVISFAEYTDLLQKDQRLLESNIIKIPAESGFADVTDFLEDICEKSTDRILLKLKASTWWQSYNSYVGNPITNLNALPNVNPNLIDPANKLNRRQQFTDLCVYYAFAQYILPLIADFGNPESEEVSKIQYYDAKFNDLFNELIAIADWYDYDNSGTVDADEKAITYARTRRTRSRRSIVQVR
Ga0181590_100533064F052627AGGMSKRSDLITQITTNIAAHTDFTISQELPFDSGGIPLYDKNLKTIYVDEQEIAVEELYSTLDQGVVNQTTTTINAYLSVDAKNQLTDIDTVVANLLIARNVVTGTVDSTSDYETDIAEDVITYTFEYNFITV
Ga0181590_100533065F030452AGGAGMAGVINVTSGSQAILTLGNTSALAQPGAAGGLAVPLVQDLSLNTSPGTVRYSTLDSTASSAFTTVVENSVSLNMLLDDDVFFGLSNTTNSVANDGLWTTSNSKTEVFFSVAFEGADSGDYYISGKGFIGGLAPSASIDQAVWISPMEITVNGDLTKSTV
Ga0181590_100533067F015477GAGMEIAKAQNEVRCAKADVEKASNRLAFCLSAVHNLK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.