NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181590_10056449

Scaffold Ga0181590_10056449


Overview

Basic Information
Taxon OID3300017967 Open in IMG/M
Scaffold IDGa0181590_10056449 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3127
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073577Metagenome / Metatranscriptome120N
F089019Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0181590_100564491F089019N/APTLMHTAPTQIESYFDTKTLDIGGTPTNAIITGVSFTFENNLARVGRDANGDAENYAFGIPSVNITGEISLMYDDNFNDGASNVIADFLAGTPATLILQQGDGAVSVAGEMNITAEIYSTAVNYDLNADTGAIITIPFKVVQPTTTGGVHNGTAFKFEYCDNKSDTSW
Ga0181590_100564492F073577AGGAGMKVKMFDKEWEVNNPTYKEKRELWKLNTMTFEGDKLNQDNYFKLLDRTEEISGLKPEDYVNKDDEKLGMANIDSLLQQVFLSYMGLSDDSKKA

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