NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181585_10289649

Scaffold Ga0181585_10289649


Overview

Basic Information
Taxon OID3300017969 Open in IMG/M
Scaffold IDGa0181585_10289649 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1143
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015477Metagenome / Metatranscriptome254Y
F030452Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0181585_102896492F015477GAGMEIAKAQNEVRCAKADVEKESNRLAFCLSAVHNLKDRLDKDIQE
Ga0181585_102896494F030452AGGAGMAGVINVTSGSQAILTLGNTSALAQPGAAGGLAVPLVQDLSLNTSPGTVRYSTLDSTASSAFTTVVENSVSLNMLLDDDVFFGLSNTTNSVANDGLWTTSNSKSEVFFSVAFEGADSGDYYISGKGFIGGLAPSASIDQAVWISPMEITVNGDLTKSTV
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