NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181585_10532899

Scaffold Ga0181585_10532899


Overview

Basic Information
Taxon OID3300017969 Open in IMG/M
Scaffold IDGa0181585_10532899 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042289Metagenome / Metatranscriptome158N
F070017Metagenome123N
F084122Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0181585_105328991F084122N/AIERKVGRKMFYYNVKFTNGESLVILADGDPVDEIPAEFQGDVIDVTTLCEVAV
Ga0181585_105328992F042289AGGTGGMIDGIFRIEEMPASECPDEFLTRVGSANVTIWRNRLADYDGKLCFSFPYISWCGDMYVNADEPMAVLVEETWEEAALDIEFDLMKKGLV
Ga0181585_105328993F070017AGGMTCDFCDTPLSDERAEIYSHCSSDDCVVMWRRMRLEDFSLTLVPKQGFQIIYKDNEFLKVGGRSSGKIN
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