NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10097199

Scaffold Ga0187783_10097199


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10097199 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2170
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034686Metagenome / Metatranscriptome174Y
F046542Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0187783_100971992F046542AGGAMANRTIRAERESSSVQGGRSVISAVRKPIGRRPGGDARAFDRMKRAIRKAERRSGDGREIGGTGATILRFRAAPLVRLIERQRIGTEEVRAADDITAAFHAQAGAVMIESPSLEKRDAAYHSREPVWVIDAISRYKRWVRHWSRRAQHGDPTLEIVVTAVIDERAFYSIEADVGIRHGMAARVVIAALRDYAARAGWTDRNTGDAWIKEAEAIFVLRQRPNM
Ga0187783_100971993F034686AGGAGMTQTVAIKLLNAAVTTGDGPVFNLDFPQLAAAVQAEIAGAPTQAVINVMALLDGGTWDTLCVLDTGQGYVSGEISPLTFPAPIRQIKGNVGALIGGTNPSVSLYFTARR
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