NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187783_10125423

Scaffold Ga0187783_10125423


Overview

Basic Information
Taxon OID3300017970 Open in IMG/M
Scaffold IDGa0187783_10125423 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1892
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024425Metagenome / Metatranscriptome206Y
F037346Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0187783_101254231F024425N/ARAWAGQLTMRQGLDITYVLTDILRLLETTAERLSRYQAGKKPAQDYDAGPDQPNEEIARARASIRSAHAALLHPFQEVYRASGGWRELGGDPARDGAAVFMAHLLCQRLNIVDGPWPELSGTGRSRDYLVEALIGATDGLAWGIQNLARDAPEPMRTGLTEAVAHLDDTFGHLRESLICSAKRDAAASDAEEIDRRLRFAIPLPERARALRTKNVRSSPLPADIAAADFPCSAAESAAMRSPR
Ga0187783_101254232F037346AGGAMDITNNERMRLAASAYRAYIEHAAQMELPLNEYAVDDDILADLIAGLHHYADSQGIDFENAVASGQAAYDRHRASEDNPYRIGDEVHLRQRRDTTVPSRGVVVSIFPERDGEPTYHVRFPGQADATPLRGLEIGPTASFPVVTTNQGTATSLTVAERLLIETAARIRACERRRVPPHEHDLADKDSLLLAIGDACALAGNDVMRHLEPQVAAWTDVITQPWHPVHVVSAAELAALGFPQPLQATVLADAQSADAGERQGAPHRPRTALPGHPASQTF
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