NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10000024

Scaffold Ga0187781_10000024


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10000024 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105009
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (71.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006274Metagenome / Metatranscriptome377Y
F008200Metagenome / Metatranscriptome337Y
F008506Metagenome / Metatranscriptome332Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_1000002434F008200GGAMGFAILNSRKRALIALAHSIVFLGIALHGFVSPRVALALHGAAVSGIILAGIYVVVASILAWLVSISRCAPERLYFVLCTSSATFGLLRTIFGDAALPAAQYLRVVMLTSAIAVGAWILHSFTRPAPESAVSE
Ga0187781_1000002446F006274N/AVPDPEHNDDPSGKHRRHVVYATETTGLLLIAFLLLVLTLIRYWHAIHWSLH
Ga0187781_1000002463F008506GAGGMLDHGLLKSVAEQLMCGSEVVVEGRVSRVMRTGARRFRTVRFAMGGKEYQAIEQNAEKPSRWGQLAREGHRVVQFRDLATQKYVAVTVDGEVTEYGR
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