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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017972 Open in IMG/M |
| Scaffold ID | Ga0187781_10000180 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 43723 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (72.22%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Colombia: Department of Meta | |||||||
| Coordinates | Lat. (o) | 4.0627 | Long. (o) | -73.195 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004161 | Metagenome / Metatranscriptome | 450 | Y |
| F012245 | Metagenome / Metatranscriptome | 282 | Y |
| F087846 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187781_1000018010 | F087846 | GGA | MCSVKRALSRLDNLLPFLTDAQIQSATMTHMRHSLRFVLALVALSCLSASLVSQGTTGSLALTATMAPTGAQPEPIRQFTFYVLTKSYAEVVKEVEGADALPSRDQFIENLKCSPELKSWIKAHDIVDLTSPDVDKLLTVNDIMNVPEFFAAYERSNSGGVTKGFPLPKYRESDKESNPERYQKQKQEFLAATRKFIETNPATVQGIELELSGVNPKTNWDNLHAEHRRKVAQQAPDTAQVKYLAAKTQTDLDGHAFISGLPTGNYWVSSLGNEATSGDRRLAWDVPVSIQPGQATRVDLSNLNATDNRRLASP |
| Ga0187781_1000018031 | F012245 | AGG | MFCPSCKAEYRPGFTHCVDCDVDLVHELSKNAIEVRQIGEEGEYRVAGGPGDPNEDPFCSFWKGEDPRVHAELCDVLEEAGIPHNTVFRRDHLFNLRNYPAFEVGVPFSMHQRAEDAVKEAYGTEDVADVGAQEVRLLPDRPAPTPRKLPESLTPSEEENIPGPPNAGEGKDWYPEDATVKVWSTEAGESADFLVAALHENEIRCRLEKKGRKAELYVLPGDKSRAREIVREVVEGAPPE |
| Ga0187781_1000018035 | F004161 | AGG | MNDLRSRVPGCIEHERLEFDLLELRTRGQYLQRLRGLTRQEQAEWDRRERAALARLVDHEMEHGCGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |