NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187781_10004439

Scaffold Ga0187781_10004439


Overview

Basic Information
Taxon OID3300017972 Open in IMG/M
Scaffold IDGa0187781_10004439 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10446
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007097Metagenome / Metatranscriptome357Y
F016487Metagenome246Y
F088105Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0187781_1000443910F088105N/AMNFTVEGKINTLDHNKLTVHTEENIIFHVSYDDKTEFKSDDGSPASSKDLRVGLMIKVDGDLTESGEIVAQKILLEKSASKK
Ga0187781_100044393F016487N/AMIQGNQIWTQALVQAQKQAYYIVEIPDFAIAIASFPSTANVVTTLGGYGVTLYGVGGYGT
Ga0187781_100044396F007097N/AMSQLTLSAIPGFFDLADSALAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGNTVPTPVDPDDGYAYSRAECQFVWMIYSNRSPAPGFVPGQAAPPAQANSQAGQLYNCPGGWDINDATGAITLRTTYWQNGTEVVSNDGIIKVYAVCLRLSLNSAN
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