NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187780_10057713

Scaffold Ga0187780_10057713


Overview

Basic Information
Taxon OID3300017973 Open in IMG/M
Scaffold IDGa0187780_10057713 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2681
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187780_100577132F000512N/AMIQVVRETHETPENVALRLARAGGINRFGEPNYRAVWGWNRMTWIGGKFQDRDQHGALLRERIELRQEPKYASVNRWHIERWLPPEVYGSPRQWYSQTIERENGVSIPALGPYPSRGEYEHCFTLEGPNGEFIQLTPAAAEHIARAIECAQRSPRALSRAHLYEREQRADRRYEQWAYDILDDAVPAFHKQPFVTVV
Ga0187780_100577134F000739N/AMNMTRIEIWLKGLLAAAISGGAGGILTGFAAVGIDPQHFNLQAGMGATLRIAAAAALINAVIGVAAYLQKSPLPSE
Ga0187780_100577135F070523AGGAVKRIRIPVLPYERAALHAKLGKILKYGNPAEILLVSSLFFVLRPPPRRKRPKKKGQP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.