NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187782_10163329

Scaffold Ga0187782_10163329


Overview

Basic Information
Taxon OID3300017975 Open in IMG/M
Scaffold IDGa0187782_10163329 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1660
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021579Metagenome / Metatranscriptome218Y
F076423Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0187782_101633291F021579AGGAMQKANLYEAILFVNRGIDDAVRGLERLKRARDPGLNPGYLDEKLTLFEMHRALLNSFFCSNVEGSELRDEAHFAKRHREHEKRMLDEVQVYQDVQAVEDNRRLEGKAPKVRFLSRDEQQTWERQYPKPPIDVGNEGQHRPGEQK
Ga0187782_101633293F076423GAGGMANRKAQEPRKARLRSSGRRYPHVQGKVVDYISHSIDDGTLCINVCFMDKTLFSLRFACDIFIVTADLSDWKTGNYEMIREYMRPIPW
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