NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181569_10030762

Scaffold Ga0181569_10030762


Overview

Basic Information
Taxon OID3300017986 Open in IMG/M
Scaffold IDGa0181569_10030762 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3873
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006971Metagenome / Metatranscriptome361Y
F021540Metagenome / Metatranscriptome218Y
F022417Metagenome / Metatranscriptome214N
F028777Metagenome / Metatranscriptome190Y
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0181569_100307621F006971GAGMKYRGFNYKKYQKVKFVIPSDYRIIDPQTKRILWKYGTIQFFANDKISAWVLEDGTKETLKISLFCILPVH
Ga0181569_100307623F058532GGALEIGVGGIALNTVGVDMTLNQNGRRQIVKDEYDLFDNKARVSWEFICNYMNWEIVKNKEDYFEDYVCKIRGIYYPMELQVAAYWHNYSIDKIKNFYISKSKIDLLRDYVDKYINVEAGCVFMNCVPNKFATINIKDISDDCLFKNDKGELFYKIPVDSKFNYFTSGLIDAKCDCLENHLEIMQRSKGRMRHLEKEYNIRGFNGICCR
Ga0181569_100307625F021540N/AMKVIDKIYDFENGDKYVVETKPCFHCGKTGTVEIFTQEMFYLNQGYHIQDAVKSLDRDYREQMITGTHPKCWLEMFGEEE
Ga0181569_100307626F028777GGAGMLGLFARNKHSHTEILFIEKDISEFRKIRYILEVEGKICSLDPEFSTSGNLRKAVHRLNRDYNSKIYKEECNCDYKAKGKLNMDGTPRKHYAYLKDWAL
Ga0181569_100307627F022417GGAGGMAQMPKFLEDYTTVDELISKMNKEYPESRLISEMVGYGDDWVIFKSSFYETKEDAEPKAVAYAKQTSKDHNSWFEMANTKANGRTLRIVFSESTLAEEMIGIAPSKEAATKKKSLDEKVKELEAEGLVEDITDSKQAIMNNIKEFAMEITNQDLDKARAFTAQALGALGMSKTEVSFANMQSVKNKIQDIATEARTHVDKGE
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