NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181569_10324102

Scaffold Ga0181569_10324102


Overview

Basic Information
Taxon OID3300017986 Open in IMG/M
Scaffold IDGa0181569_10324102 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1064
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037202Metagenome / Metatranscriptome168N
F059882Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181569_103241022F037202GGAMNNIEDIKNKWENTRLLEELPEDEQYSMSQLLENEARHILSTYKDVNESQLANICFPLIRRIFQSSGFFEEGDCPLTFTYETSVVPAFTYFKPDEEESSVATTQVYDFDFQMSIEEVEKIRNNGHNAIDGEVELTSILSEAFRNELNEKHKGKHLIFGYPIMMREEDGELIYSYRCAVLPGGSRLHEGGYKE
Ga0181569_103241023F059882AGGAGMNNVEILYQECKVCGKSFRPPTRKELEKSILFKAAETLGIDMGNGYTGGNSLLAMLNCSVECARKRENKE
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