NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10000097

Scaffold Ga0180431_10000097


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10000097 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112059
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (93.07%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047751Metagenome149Y
F072485Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0180431_1000009739F047751AGGAGMAEELPPEVKESIDDFYLEMSPEIKELLHGWLYKIVDAAYKGISALPAEQRDGILMKMSKACSDQAKMVLDCQPGMDWEDYKKHMAELKPPFGPRKITQIGDIVHWTYVPPKDKDGRPICQCPLIMYGWIEARPEVCACSANSVASYIEEYTGREVTTVETLGSPMVNGEDECRFLVHLKPSPFTTPKHEHIP
Ga0180431_1000009740F072485GGAGGMIYLYEDITIVSRFQDEFWKVMGTDYVPDAEKNGLRLVGMFMMGIHYNENLALWEVDDWAALDRIQEFHDKDPLAKVWEREAVDYRTDYVGKVLEPAPFSPTLAQIKGGDYKSTIYLHTLARVLPGKADEYVAAVGAELAPMAQNWGMKLVGCYQAVAGTASGGEVINIWTAGNIHSDWVKIRETSLNDPAYKEWEAKAGQWRPKVVYRFLYGLVPYSPLRTPFLTEEAAAEEVRTVAMPEVEWGKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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