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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017987 Open in IMG/M |
| Scaffold ID | Ga0180431_10008714 Open in IMG/M |
| Source Dataset Name | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11595 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.4166 | Long. (o) | -115.9166 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026885 | Metagenome / Metatranscriptome | 196 | N |
| F028498 | Metagenome / Metatranscriptome | 191 | N |
| F098315 | Metagenome / Metatranscriptome | 104 | N |
| F103078 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0180431_100087141 | F098315 | N/A | GGSEVKGVDVRKYTIAGVEVAMVELPVLNDTEFFPELTSVSGLSNPYRQQHTCFALDLDPIEVKGGGLAPAIEKIFRGPSEFYCGYIKGMADAGVPTVDNFADYSVDIVSSVDAHRCDIMADNGIDMIGKFSGLIELVA |
| Ga0180431_100087143 | F103078 | N/A | MEREIAVIKPKGVNHIKQAVTLTATYNLKGRNISLNQYGEVKPGNLTKNRGDIRFAGELATESKIFGDSFDEVEDQVNFWLNHPMVEDVNGLGKDGARFTIEIIEDTKRKKRSKTVNVNRVVSTVYGMTEAERKDVMYFFKQDPRNVSDDDITLTLVDIQDGLLLKEPNTSRFLDTFGSLNKQSVANKVEMLVYVNKGIVSGFVTEDAGKFYIGDVLIGKDEDDIALFFKDNPQMYDNLVRSLADSGDDTAFNELNEVEGDDITPAEKRAHFMKLYKKYKLKGKFPNDLDKAIERIHAYEEENGIELSE |
| Ga0180431_100087146 | F028498 | GAG | MADEGGIFTDESRYDVGTMLTVLNAARAFAITEMYRKNNRVHPNFIQRVYPEYKEAIQQSDCYNLFEIPRTVEINDKMDGLMYVGSIKGNEAYSKIRTRMQLNSRRNQRVHKLYMNKRVHFLYDATREYLEIHDPKVKYPLVEGVFEDPTSVPQFSFDHDEYPITSDAMKRIEDLVRRGTILDSVRIPVNKISNSQEDSNVQRDIQTK |
| Ga0180431_100087147 | F026885 | N/A | MIEVGKYSIVSLQEAVESAKEMLRLQDTTEFDGFLLRKADEAMRHIGDDTTYAKRACTLDIIDGRAKLPMGFIRLLGARMSDSNGNCFEQPYLDLPYLTDCGCENIANINNGFNNPFQIQEGYIVFHAPSDLETDTIRIAYISRSVDDDGLMLMSERHERAIEAYLCYQFTLSFFENYPVNIRQEYKNTWKNQKQQLKGMSQRERFEENKREIAAILNAWITSDRNDR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |