NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10026656

Scaffold Ga0180431_10026656


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10026656 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5696
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y

Sequences

Protein IDFamilyRBSSequence
Ga0180431_100266561F006543N/AMKKFSFIVDVVASDLDREVVVSSISECLTEALPDDVHANVKAGEIKSFSEQGYKVWRARVTGVTAKQAGDAHNSKTEVEESVA
Ga0180431_100266563F000325GAGMKTANGNDKLGKENCIVVSRPVGDTCPPSCAFLGNGCYAEQTEKIYPGVRPAGMQNLITERGRIRSMIIDAERKGKSIRWHERGDWFLDGELDVDYVTNVTWACESILADGGSLPDMWFYTHIYDSRLVSLGKYMYVYASVHNDNDMGEALAQGFKLFAWCDSDEKIAPKRPRSKVKAQAWRESLPKLVVLNGTKFVTCPEIRRGRGVVTCTPTKSSVACNLCVRGLANVLFPSH
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