NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10137280

Scaffold Ga0180431_10137280


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10137280 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1949
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043342Metagenome / Metatranscriptome156Y
F043418Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0180431_101372802F043418AGGAMGLLDEYGIDTSEAETPSYDMEDGIYEFTVGDVYVKQGSQKYPDRAWVIIEYLVGDEGKKQSELFELPADPENLTDRERQKLGYYVARLMDLGVDRAAVNDVDREDLIGLRGTLQLYSSAGKGANAGKMFQNIKNVKLTKASEAPQPAQKKARQTAASNPFA
Ga0180431_101372804F043342GGAGGMDATTELREFYNYIWGVDAVTEAATFVYLPVEHEGKWTPFMFEWPRQIKGVVAHTLKWSAIKANVFFSPALFKVANPTKDSVLGSWVLWVDFDGNAPTEWAQEPEEGKVFVPPPTLIVQSSIEGHEHCYWKLNEFVSDIETLEDKNRALAYVMHADTSGWDADQILRPIRTTNHKR
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