NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180431_10279451

Scaffold Ga0180431_10279451


Overview

Basic Information
Taxon OID3300017987 Open in IMG/M
Scaffold IDGa0180431_10279451 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071190Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0180431_102794511F071190GGAGVTATVVQSGDYTLEIDTGAPVRGFRLDDTVRGVLDGTTFVLDGLTDFADVTDGVKGIRVKRGRRDIKDQFGAGTMTFVLDDTAAGGVFNPFATDSPYYDPANAKPGLAPMRLVRLYRESELLFVGRIVDYDYNFDLNGDDTVSVTCADDFYLLAQTVTETTSLSKQFSGARITAVLDLTEVNYPTGAARDIATGTVEIGGGGDYNLELGQNVLDYLRLVNEAERGRLFIDREGVLVFENRIGATLSTPVAAFHDDGTNYPYRNVDISFGADKVVNLVYVSTLNNKSGTASDATSQSEYFIQSLAVTGSILDTDAAAQALADYLINPEPEATFTAVEVAFSQLSDAQRDV
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