NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10000592

Scaffold Ga0181520_10000592


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10000592 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78988
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)91 (88.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037688Metagenome167N
F039069Metagenome / Metatranscriptome164N
F068740Metagenome124N
F071177Metagenome122N
F082600Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_1000059236F039069GGAGMSTVLSRTPFGLMSLYPICVADNLKGISRRSSRWQVLEAFLLNSEGRAERVYEGRSGFVILMAIPGQPGTGAFYIYDEIHRDFFMVNFADQDNFHSSMFDYVVQFYDLGQYVELPKLTLVPKPASADNVDVASQSKRRSDRRFNRNRGPRVPHAVINAAGQTHMGLVTA
Ga0181520_1000059238F037688GGAMFRRAILTLILSAAQAVVALPATAQLHHHHQITRSWVPGSRMPPRPMGNAGGQQVEWWLPLVEAIPTLLFLLGATPGIIANRKDIPNWKSYFWRGLFFGFFFFPIVLVLLYQVLKYEPAPITNQAQIRPPNIAVPQTARSDGGHAAADIPHPVSFEAESDQ
Ga0181520_1000059247F068740GAGVDRAAILKVVEESYSKGCVTFTNEIKGKCQDPIEPLDKKGKYRLHPLIWTGILALGAAIGVILYFHFQS
Ga0181520_1000059253F071177GAGLNTNSSAEKGAPALQPGASVEKVRKPRKGSAGQDAASCKFYIGDIKDGLPVMTKEVSEKDALIDCVRTQRPFMMVQLWTTASDIEDGRLIVVKAPVPSK
Ga0181520_1000059296F082600GGAGGMNPCRSIPSTTFPALLLLLAACSHHTPEATVEVIDTSLSITPRAEKAAFDAVQDQIAHMQRGDMLVIIPITGDAANDIGGRILRLSAPTQRETYDTDLHRFQQQARKQYAAWVKSLDQHQSRTDLLGTLDVAQQELGLLPRGSNPRLIDASDFLEDDGTYRFVSARELADSVRARQLAVKLREQHGFAMQGVSLCLGRLESNDFARLSAARKDAVEAFWAAYLTTGGEPARIQFDGTGVLTNTLRGCAWGKR
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