NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10015788

Scaffold Ga0181520_10015788


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10015788 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9155
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053110Metagenome / Metatranscriptome141Y
F086481Metagenome / Metatranscriptome110Y
F100211Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100157883F086481AGGGGGMGLRRYLGIFIVSVVLVLAHGIPGLAKAARNVDIEHAVVVNGANLPAGQYAVRWEAQNPQASVEFVRNKKVVASAPCKLEDRGKKYDSSTVIYATNPNGSNTISEIRFAGSSEVLVFSE
Ga0181520_100157884F053110GGAGGLKRNFRKYFRTGILIMGLLLAAGIPAFAKNSGTVTLLRDASLHGKPLRAGTYAVEWKTHSPQATVQFSQRFKVSLFAEGRVERRARKYEQNSVVYDTAPDGSLFVIEIRFANSNRVLVFD
Ga0181520_100157885F100211AGGAGGMKTITRKWFGTGVLSLGLLLAAGIPAAAKNSRTINIDHVVVLQGKNLPAGRYKVEWQTHSPEASVQFLRDRKLVVSTDGRVEQRDRISTCDAVVYDTAPDGSVTLLEIRFAGSNKVLVLN
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