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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017988 Open in IMG/M |
| Scaffold ID | Ga0181520_10022312 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7126 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .3 to .4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019267 | Metagenome / Metatranscriptome | 230 | Y |
| F022798 | Metagenome | 212 | Y |
| F023263 | Metagenome | 210 | Y |
| F048047 | Metagenome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181520_1002231210 | F023263 | AGGAGG | MLGNQGLTAAKFDTNIRALRGTVMGLPVSNLSTESDFYVGLPSGFNVVPTGVLSQDVVEPGYPLTSELWLDPNTSNPINGSTPPSPFVSQGRAWGLVVSAAEAEVIAADTTIQAEDDVVIADATGRVTSVRNVTTGNTAYVVGKAKYPATAVNQRIRIQVSLRQTKV |
| Ga0181520_100223123 | F048047 | GGAG | MSNSDIAKACDFKAAMERSNVEQVVLPTSGLTVLLCRPPIFAALAMGRAGTQLQARVTSAKPEELKPEDVEAFTQWLTETLARLFVQPRFSATLEPDCVGLADILLDDLKFIFRWLRGEVFSTGNREQVTGDRDQTPVTCNLSPVTSTEDLGRFSGGQGAASVPGGRGRPQPLPSERTPGTHRDAGLPAGLHRG |
| Ga0181520_100223126 | F022798 | GAGG | MSYTTVTQVASMFPTFTRNGPKGPSDTLIQTFVDDVAAEIDAILQRRFQEAYSTLGFPAWQGAFSVDQINLLEKINRYGACAQLAEVFESSGISAAAHVAKSFEDEFREFCNKLNARDTDGKPLAQGGDYDYLFDPFAKVETPRAQLGGVAGGDQYPSETSCEDSTNVFKKWDRSEF |
| Ga0181520_100223127 | F019267 | AGGAGG | MSASATYTTLYSFREERRRLYRRVRVDITGLASGANTIAHGITKRESSAQGAVPIEELALLTSNVAVHRTQAADATNLYYTVDSGSGTTISVYVTV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |