NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10023350

Scaffold Ga0181520_10023350


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10023350 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6895
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083801Metagenome112Y
F098552Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100233502F083801AGAAGGMRLVYADTSALFAYLHPDDEFAVVVDAAVQTDPPDFVYWAFLRYELRHNLRLARTNRHGEAAWRALRAAEKTVARLRWQGELTADKMLDAAEELSAEKAGDFECGSSDYLHVAAARRLHLLSDLDEFWTCDVAQAKLALSVGLKTRLFALKA
Ga0181520_100233503F098552N/AMTEITSKQLHEQTAAMLDQAMGGQRMKVVRNGRPAALLIPVDEEIDPSWEEIMAEVRTARAQGGSTRPNPVLAERRKRHYAARVR
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