NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10026153

Scaffold Ga0181520_10026153


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10026153 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6341
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044858Metagenome / Metatranscriptome153Y
F061484Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100261533F044858GGAGGMMEYHTRRSCRVAMSVPIRVYGTDYRGVDFSEDALTIIVNLHGAKIRLRHQLLPDSEIRLLSQPTGRDSVFRVVSKLSSSELRFTYWGVENLHPEKNIWGVDIPPLRPRDQLKVSVTLECPNCSARESLRGDEELLASLLEKGGVERTCKACKTPGVWKLQPFHES
Ga0181520_100261534F061484GGAMTPGGLLVHSCDDWPCAVCRPSQISESRAYCLCLDCAYAIVAAASAGEQGARALLDEISDALSLLEAQQLDPRMPAN
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