NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181520_10029723

Scaffold Ga0181520_10029723


Overview

Basic Information
Taxon OID3300017988 Open in IMG/M
Scaffold IDGa0181520_10029723 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5783
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008672Metagenome329Y
F062368Metagenome / Metatranscriptome130Y
F083583Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0181520_100297232F083583GGAGGMSDITAIDQSYHLNYNIEIGKFTCLAPDTTVSADGCNVPSGANGAFLGVAQESILPDAMADYSGGVYTLTSGTAWPANSIPSSGLGRNLRTRIFGISRVVASGAISRGAYVNIANAQGQVKAVSEAVGTYINVVGIAIDAAVNAGDVIRVLVMPFTYKM
Ga0181520_100297235F062368GGAGGMAVSVSLTEQFIEETLAGPYIKNAKLTVTGLTTGANNSVPHGLNDGKGNAVTPITVSIEPSSNNNFYEYQAADSTNIYVGAGAGSGTSCNIYVEY
Ga0181520_100297237F008672AGGMWISYYNAGLSKQVVRQLLAVIQRDIQAALDYVSGTPGSYVPFAEYDLALLPVQQFPALLLTPDTVAVDEQANFTLHQSMRLTCVVTVTHQDRNALAELLQDYVRAVRAVLDSLWELTPGDFLLTSLPLPSPPFSQGALSPGLANGKLTGLFAERHTFEEIRRAPQSGFVMAATMSIVAEIEEN
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