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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017988 Open in IMG/M |
| Scaffold ID | Ga0181520_10039359 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4725 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .3 to .4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002761 | Metagenome / Metatranscriptome | 531 | Y |
| F003859 | Metagenome | 464 | Y |
| F016632 | Metagenome / Metatranscriptome | 245 | Y |
| F025427 | Metagenome / Metatranscriptome | 201 | Y |
| F027079 | Metagenome / Metatranscriptome | 195 | Y |
| F028392 | Metagenome | 191 | Y |
| F098482 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181520_100393591 | F098482 | N/A | DERVKEEIGFYNPDSWVNEDGNLVTDENRWKLRRMYAAGLPAMRFRHCRDAFYRTQMESPQNSDPDRFRIRFREPKDLMTVKPQELAGTAVRKYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLHGRRLQHFAETDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQVVATPTQAMVIDDGDALFDRHPEVQRYDDQYVIRMIADARHGQMGIGCVVNAIVWFNLLWLNRESIVAQLRAMEPSSKVVEAIRWMELDLPKSQMPMIASRLEEIIDSIKMNGKSVEWASAAITEFRNTCPVAPKFWWQGGFQGEGRIPRHRLGNYNEPIAVATAMDAAREEWIEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWHLYNRTREAKRAEFLKAGKDHRGKRITNEQEAGLSAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGATHKYVPITWESDRVRADYGHLNLDVVVEDTLVRMAGTTPNAANWLGIVDVPDGQYRLEHGLLATEDTSETTPQPATLALPAVSGFERKLKDATLKQQDRQRIEAELKLFQAHVGQRVTVKPVTYHNPQTCQDEPAAEVFLDGNSEPLCWIAREHVPAVTRELTGILVSNGRYSLTAICTLPN |
| Ga0181520_100393592 | F028392 | AGGAGG | MPNTIAVVHLPEALRSGNSALVKLAGKIDSFSLVLWRTPESQLKRQIEKDNHAMVFTTRKEVRRYCPKYRYFPGEGILDFSTDCASGQLEPGDLGTPPQPKRGRLCHQCCFFLGEPEEQAVEMTLGETPKHLTPAN |
| Ga0181520_100393593 | F003859 | AGGAG | MDELNSPREASRCGMTVAAYLRPVTGLYKSIKLGWDWRRLRWAVAAASEAAQGHEANGVRPGSQEYKTLYDEVANKVQQYSRESGDPIDTLKAKLPALCAIERLAHPDPTMPHNRLGLTLGVVIASVLGSIGIGVLIGLGAGMAHWIAHLFA |
| Ga0181520_100393594 | F016632 | AGGAGG | LTGILEVFALAEIGSGIGFLASWRNKVLKANVNYFRQPNNKSSPFDKILRAKVGRAFTRQDRLRLQLADGLVQLIRKLVLYEAFRQVVRGLALAHSPMRQALGKKGGRPW |
| Ga0181520_100393595 | F027079 | AGGAGG | VIKSFLNLCLLLFLDMLAYMVAIVAAATVAWAAVCGARWIFAALRSSVMALRARRTKKEMHAHATR |
| Ga0181520_100393596 | F025427 | AGGAG | MQPGEMEELLVSLRTCPIQKKGLFWRLFKLYWKKLLFIALMLVLPGGLIVLLLCATAWALNWEHEMTAYMDETYKKWKEEHDVHSE |
| Ga0181520_100393597 | F002761 | AGGAGG | MTFTPSSSSSFTAGAVFWSMVWAGLGKLNELARFVGFKRARPRESALRWINSHKVIALTMTEVVNYSVHGISNPLGVTFALGGTIVNTLMVTFVVPIWCRLTRLESRLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |