NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180432_10315224

Scaffold Ga0180432_10315224


Overview

Basic Information
Taxon OID3300017989 Open in IMG/M
Scaffold IDGa0180432_10315224 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1189
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025878Metagenome200N
F047990Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0180432_103152241F025878N/ATFRILLPGINGISDGISWLQKQTEDVNEEWAAWNQTVDEARRAAGNMYPEIDETAKSVEDLMQEATEAAGAQLELANSINQVYEEVRKLNPELVEMLGLLDLQDDIEKLRTEFDKYNEVIAESSGNVRELQQAERDLTRAIIETLSAHGLLTLAFDKQLKIKIDTGDLDAAYASALRVLNAFQQVQQVSAGQRPSTYVPPRDELGFLSAPPVATTTITPVASITRAPSGAVQNVTVNVNTPTPTEEIGKVVVDSIRKYNRTSGSSAIGVLRL
Ga0180432_103152242F047990GGAGMSATIVQSGDYTLEIDTGDLIRSFTLDDPVKGVLDNPTFVLDGATGYADVTSGTRSIRVRRGRRDISDQFGAGTMTFILDDTAAGGVFNPFANQGPYYDTTNTEPGLAPMRQVRLKRENELLFA
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