NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180436_10027291

Scaffold Ga0180436_10027291


Overview

Basic Information
Taxon OID3300017990 Open in IMG/M
Scaffold IDGa0180436_10027291 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4397
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F040073Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0180436_1002729110F040073GAGGMALKFEFSPEEMFWQEKMIRQINECNSMSELKEMATLLTKIATQRQVAIKGLVKDAMEQMTAPLLESKH
Ga0180436_100272917F001018N/AMTQVTSTNLDKLNTLQLYEHYAALERSLPLLTPESQDVAKAELEACANIRSEKVDRIYYAIAAHEDALERIKKESELVTQAKRSHESQLKSLKGLLSWLRRSLPGDNNKITGKNYQFTLSKKKDLTVEITSDPELWDTEERLSYCIEEEVCTTKRIVLRSLSGEVLEERTEPKTTTKIVPNIHAIRDAHKNGQKLPQGVKVFQEYAVRSKRIYGNQRLESETSQHTGQLLPKD
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