NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180434_10287613

Scaffold Ga0180434_10287613


Overview

Basic Information
Taxon OID3300017991 Open in IMG/M
Scaffold IDGa0180434_10287613 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1293
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044811Metagenome154N
F091572Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0180434_102876131F044811N/AHIRRIGGELMWRDWIGLPHQFRADPRNGHGADCLRMTWNVLEDAGVPHPPFDPIWFDLAENGRHRLLARAYEELTIPLDAPEEYAVTLFSTERTIGIGVVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFT
Ga0180434_102876132F091572AGGAMMLPSDRYLADILGLTEEQYRHFQIEVRKRAAEGPQPAVVAGTETLIAAGISLLIGVGTTIISSLLKPTLPQPGQAPGQPRQTQDITDPIIRNSRFAPRYGFDSQQDIATLGSIIPIVYANRELISGDYYGGIRINMPMLWNQILSLGGGQMLRGVFLLGEGTVSSIDTTGFAIGSNTLQGYVFDNTSATEQGSRVTVYFSPDGGRIAGTDRVLGRTNANDDGSSSSSDVFQVYWDGDEQQDFCSSNRPSTQTSFGVYAPIGNDLMYKVNPVIRPGVRSQYQANTTDGRLQVDCPNDDQ
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