Scaffold Ga0187891

Basic Information
Taxon OID	3300017996 Open in IMG/M
Scaffold ID	Ga0187891_1000175 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67781
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (66.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

67781

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (66.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F000451	Metagenome / Metatranscriptome	1124	Y
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F015314	Metagenome / Metatranscriptome	255	N
F021908	Metagenome / Metatranscriptome	216	Y
F022873	Metagenome	212	Y
F100557	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187891_100017523	F000335	N/A	MPASLCTAFTELREYAQLQNQFHDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYSFWMSQNAGLTPFAFYNPFDVASGQQIGSNYDPTGNNTQGRVTVVFRGNWAQATDIARTNVQALELVEVV
Ga0187891_100017525	F000451	N/A	MRRFQTVVKSARFVYSPYTATEMQGFAQVLADSIRARIQSGQNIYDQASAPLKPGLAGRRGYPDYKAARGLNPVRDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRRMTASQIAAFNNRREAQWGVSPRDRRAVLAAFQTRPFVMLKAA
Ga0187891_100017527	F021908	N/A	MDGCPACGTDWKAIDVSHGPGCPKNLLEEAMDTPNGTLVRRCFRILNAKSIGLTITLADITEEEFRVLELIEAERQEQISSGGKSARNSR
Ga0187891_100017531	F003186	N/A	VINPKTILGEWVTALQSCPDLVTAIGGDGNNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCFPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0187891_100017532	F002261	GGA	MPNWPSIEAFVDGVIAQTFGEPVVYQPVQAGAAHGSAFTVTAVRHLRPRDESGAMASFEEISVNASDFANPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS
Ga0187891_100017535	F015314	GGCGG	MMLRRESWARLTRGLVPPLYVLRPLQGFTPSDIGDEYPAPDAANKVQLTRTRQLYEQRRIGTQVEVERALSRLPKQEPAKPGKEKRHGSQSGKNAR
Ga0187891_100017545	F100557	N/A	VDRCRAEIAAAEALLRAGHPDVEGLCMALADWSAELRILERGRDE
Ga0187891_10001759	F022873	AGGA	MLFEGEELREIISRTSNEIELRNEHGRCCRFLSSAEALVLDLDLFVGIGNRRRIRFLRSRTQKFALNAGSHTTQRLKGEAEINIAHPLVREHRPVWSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187891_1000175

Overview

Ecosystem & Geography

Associated Families

Sequences