NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187891_1040229

Scaffold Ga0187891_1040229


Overview

Basic Information
Taxon OID3300017996 Open in IMG/M
Scaffold IDGa0187891_1040229 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2026
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F015067Metagenome / Metatranscriptome257Y
F026325Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0187891_10402293F026325GAGGMMTDPASAIKRQVHQLVDLQIETLRQPSCLTTSDLLDYRVRSEKIAGLYQELDQTRRTSFKGQLRRAS
Ga0187891_10402294F003851GAGGMKHRKLAAAACRTIDEDAKRVLRALAEATHGRANTNDPIVEQLKQCPEAFEVGEILGKAFDSLKYAQDGAELGDRYLPPSGVVIPPLL
Ga0187891_10402295F015067N/AMSLLRLGICRSNDWSGSAVDFVERGFRRFCSQNRAADVKKVWVGDLRITDSLFELTEQERNQVEAGREGMTDHLYLIGDYEAAASIPIGATLARLEAEHDLLPAAFYEVLTTNLYKWMRVYDYLDAQEHAEMWMEDLSDEELEASTYRKVDMEIPACIKRHSKTLKYRTARNLLREIQLHTSVARE
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