NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187870_1071882

Scaffold Ga0187870_1071882


Overview

Basic Information
Taxon OID3300017998 Open in IMG/M
Scaffold IDGa0187870_1071882 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1405
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → unclassified Candidatus Melainabacteria → Candidatus Melainabacteria bacterium RIFCSPHIGHO2_02_FULL_34_12(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021893Metagenome217Y
F040993Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0187870_10718821F040993AGGAGMASRGGHGLRLLRSSIRDGEHLPLVKNGSDNRRTKFLRFGRGLAYVLLLLLIFRALGQGLILGVAGAALVLLLQELVDPTPLFWSAPWDALQLILSRRHRVNHLWLHRTQEFALESIGRSIKADGFAIDDGFVLVGVGGNKQLVQWTADSAWRGMTQEWERASARQSCKAVRFLVAVWLMTGGLLAMSVWRGIDLPGALLIALLSAAAGHALARPVENMLAEWLAIPAWRDEGACRFRLELEPIEFPEWLWWQGGQGFIVHRIPEEELGKD
Ga0187870_10718822F021893AGGAGGVADYYTFQQLSQTLGIAETIIRELQAKGLLQPTVKNGRNYISSQQAYCLRAAVRQARKDKIDLLEAFAKVEERWLAYVSSPKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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