Scaffold Ga0184604_10079018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0184604_10079018

Scaffold Ga0184604_10079018

Overview

Basic Information
Taxon OID	3300018000 Open in IMG/M
Scaffold ID	Ga0184604_10079018 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	978
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040753	Metagenome / Metatranscriptome	161	Y
F040799	Metagenome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184604_100790181	F040799	GAGG	MQQAIAKVYGNEKFGYTVSYPDHWYPSRLRYANEFEIRNYVSEDPQVPARNRALVRIVDKVNESAEVTDRFLDSLVVGQNTPKQEHQTLAIDGHRAVRVRGKLVYPTGSSIDTPTFYLAISTYIADEKHMVSLEASAPVDVDESVIQEIIKIEESVEFDKGG
Ga0184604_100790182	F040753	AGGAGG	MKRLTQAGLAVLIAGLVLLLKGSSPLVTTATAQTQNKAQQQEKESTRDAPPDLTPYVRSTVPEEGGPRAIKAFLPIPGGFIVDAVV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.