NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184604_10181979

Scaffold Ga0184604_10181979


Overview

Basic Information
Taxon OID3300018000 Open in IMG/M
Scaffold IDGa0184604_10181979 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)711
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033932Metagenome / Metatranscriptome176N
F036317Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0184604_101819791F036317GAGGMTKFALALGIAFAFTSPPAAAWAGFDPPNQLAAPFSPNVTIYRPDCSIKEDPSYCDVSGGRMRN
Ga0184604_101819792F033932GGAGMKTLIVFAALATAIASPALARPAHQPAHQTDSVTSGSQYLGADPDAQVRFDLERESGTRNGSF

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