NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184604_10215349

Scaffold Ga0184604_10215349


Overview

Basic Information
Taxon OID3300018000 Open in IMG/M
Scaffold IDGa0184604_10215349 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078687Metagenome / Metatranscriptome116N
F099903Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0184604_102153491F078687N/ARRLGRALVSLEGAIARFEAHGNGDVEPNVARLKRLADDIRAVLRLAHDNAPPA
Ga0184604_102153492F099903N/AVPCVTHALELLRELRTEWVGWIENGLDGTFVVVLAPERISDLDELMSRVEKWITAQDFLAIRFHLDGRAYIVQRGGFVGPADRSHPSED

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