Scaffold Ga0187868

Basic Information
Taxon OID	3300018002 Open in IMG/M
Scaffold ID	Ga0187868_1007132 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6197
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6197

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F046150	Metagenome	151	N
F050107	Metagenome	145	N
F050108	Metagenome	145	N
F053027	Metagenome	141	N
F059592	Metagenome	133	N
F102366	Metagenome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0187868_10071321	F050108	GAGG	MATLAIDQMQFPFMPPPAPLPTELHNLKHNALQLGQLGNTVRRGSKWANVPKGHVIDLTEGPDHKYVGAGRVVKVWTGPFNEVPAVVLDRNHSGSQSYSSVLAAMRNAYGADFSEDEIVVFLDYTRIS
Ga0187868_100713210	F046150	GAGG	MNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQGPQKVYLCPCGEIMIPPNYASGVPAGSERDLFVQSLKLAIARRNSTTLDQVAQGTVSLAEHNKLKAQFEELAGRFNTWAGGGDMPEPVELSTEGDEETHEQEPAPAPLQLTMRELGAKPPIATGTQGRSAASAVQAIGDHKEVTSTPAPIYTGGARERMKRQGGQ
Ga0187868_100713212	F053027	AGAAG	MLLTERQVDLRLKCPMFGMEDKHGPSSYECAQKLLRWAILNAFKGRLVPVATLRGKFESIWNGYAAGWAPDHQPAYYAGLRAGNTAARKIFLFLQHYEVLKPVEVYSVDLAGDRVEGEYAVVLRRHDRRTDERPVILQAHEWRPAYCQQPGAIELIRYVHLMGATDYTSPGVYHLPLFRGEPWKMKNFDLPLVRKAVASILNAVRNTDHPVPGSHCEDCIGKSCRSLAHA
Ga0187868_10071325	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRTPFKPLEIRHLVSILEALAPANSLTKDMKDLHESMKRRFNNLPLKNRPRLLATGEWVITLAWYKADIEEVLTLLLEAKSGKSQTVASLAEQQKAQGKELFEV
Ga0187868_10071328	F102366	GAG	MMVLQHISMPVSDVARFEVSFTGNSDCFVARLDFPAHRGGGYQVFEGILGYKVSPSSPVMGKNRVTPRFPLRPTIPPQTAEDLKEEERQLRLRLDYGETFNNDRVS
Ga0187868_10071329	F059592	AGGGGG	VPKHQLASRSVNVEFLAGLELVSNKVFPLPGGVGRRQNPSAYDPRLTHLSGLTPVGEEVIYYEHIATVRHKATNQFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREIHIYLVTRTPQSVPIMRSHEDWLAHIADIGTFDTLAYFLAKNDVIDEKALATLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187868_1007132

Overview

Ecosystem & Geography

Associated Families

Sequences