NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187868_1014445

Scaffold Ga0187868_1014445


Overview

Basic Information
Taxon OID3300018002 Open in IMG/M
Scaffold IDGa0187868_1014445 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3972
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017431Metagenome240Y
F041547Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0187868_10144456F017431AGGAGMPPVVSCPLSVVSCLLQLTTDHGLRTEIHESQILEEGLHMTKANTKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDCLRPVSLGGVEFHLRYMRDRGWVELGIEKKIGLPEVIRWTRITANGVDEYDRRCVALGEAK
Ga0187868_10144457F041547N/AMISANQSQAGLIGAGGFLATSMAGVGAYRLFSAVTRGFMRVPISLEKGADSLERVVLAVETQNAVSDQVMELKGLLMTTREEIMKMGNEREQIGRELRLMSRKIETFACFAQDG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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