NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187868_1153604

Scaffold Ga0187868_1153604


Overview

Basic Information
Taxon OID3300018002 Open in IMG/M
Scaffold IDGa0187868_1153604 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)834
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003031Metagenome / Metatranscriptome512Y

Sequences

Protein IDFamilyRBSSequence
Ga0187868_11536041F003031GAGGMHSVATGLVLIPGAVALLVFLVFTYLYEQNRHNYFRAWQLAWAAYTLHYALKALEYFQGPSALLFFLSSLMLVAMAICIFVSTRLMKEPFQLKWYDVALTVAGVLLAYVGLRAQMASGIFSEKATPVPIYLRLEVGLAVTLLYCSFHFYRYAFRRDSVAFRTLAFSLALWAALMYAGQMRQPFLEVVGQ
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