NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187876_1009014

Scaffold Ga0187876_1009014


Overview

Basic Information
Taxon OID3300018003 Open in IMG/M
Scaffold IDGa0187876_1009014 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5461
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019749Metagenome228Y
F072969Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0187876_10090145F019749GGAVVDKMQAQEGAQGKRGSEGDHRPDHAPKKRGDLTATLNPLLEPRLSPGQPGRRRGVSNYEWTPETDRLLVELCTKWGAAKAKHIIGRRFQEGLLSDAAPKPDSVRKSVEHRMAKLGISKGRKRRKPDGRRPKRWTESQTAALLGALGADATIESIAARTRHTVKSVRAKIARLDYRVHEIHGFMVFTANTLAALLGVTPRQVRRWKDQGWLDTQDRRITEKCLGQFLRAHPDRIPFDRLRREDQVYLVDLGFPCPEAATFKKNVRDILDGIGRQRKPRRPLRSGNATAIGVDHGEGSTEGDDGATLAAGTSG
Ga0187876_10090147F072969AGGAGMGNKPSCGFPSRRMEKQLIKLAGEALRANCRNAERIGCPGPAAVGAVVRRRLEYPSFDDIVDHIATCAPCFEEYNRQRRRQRLRNAGLLLLSCVGLLALGLLWRHGPAERPYPRESAAKQSPSPALTATLDYRNWTTERSEQSRPRTTKPPHLTRGRFDLTIMLPIGTEDGSFTVQFRNDNNESVAEVTG
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