NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187865_1000220

Scaffold Ga0187865_1000220


Overview

Basic Information
Taxon OID3300018004 Open in IMG/M
Scaffold IDGa0187865_1000220 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82199
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (74.39%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000840Metagenome / Metatranscriptome866Y
F001499Metagenome / Metatranscriptome682Y
F001878Metagenome / Metatranscriptome623Y

Sequences

Protein IDFamilyRBSSequence
Ga0187865_10002201F001878AGGAGMSAPSRRPEIRRRRTRAEKIAKLRKRLAAASASNDKDRLTAKLHRVGLVSPGNPLVKSA
Ga0187865_100022025F001499AGGAGVEHIDPAVIYRFDTRSSRPCEFCRELDPQFPQRRPLDQMVATSRKAIASAHLTEDGYVRHRMLELRRITSRAPLTAA
Ga0187865_10002207F000840N/AMITLEERIARTQRLLRRLEEDQPYLQVRLSALSAEHRESANAFAGRVRAEAEAELQRLLAERALPCECNVPQSAD
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