NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187865_1000307

Scaffold Ga0187865_1000307


Overview

Basic Information
Taxon OID3300018004 Open in IMG/M
Scaffold IDGa0187865_1000307 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69015
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (63.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000688Metagenome / Metatranscriptome937Y
F001591Metagenome / Metatranscriptome667Y
F089726Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0187865_10003073F000688N/AMAEGGQRARAKLQSISITGGLLQLQHELSTGDFVEIAFHTRSGAICGMAEMLHPTRKFQSACLQPFRFIALGDDDHRKLRMALDSALDRSFLDPVSEQLQTPPGF
Ga0187865_100030755F001591GGAGMDRRKERRLNLELPVRIWGVDRMARPFAEMVRVRNVSNHGAVLTGVHSKVQTGEVLDVQLGASRAQFRIVWMSLSGEAGIQALAFEPPILGIGLPKVFEMVGTG
Ga0187865_100030757F089726GAGMSDEKIDLLCKHCGQAFSAFLHEMADHNAKVTTCPHCGKSHEFSPPNAAKQVTGARPIKRTI
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