Scaffold Ga0187865_1000610

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187865_1000610

Scaffold Ga0187865_1000610

Overview

Basic Information
Taxon OID	3300018004 Open in IMG/M
Scaffold ID	Ga0187865_1000610 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	48046
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (65.31%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002611	Metagenome / Metatranscriptome	543	Y
F028390	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187865_100061015	F028390	N/A	MNFSVLLVKILEYMFVAGWAGTVVVLVLTFVEDAGTLLDRKDENSH
Ga0187865_100061028	F002611	GGAGG	VKAYRIQRIKGGMKFTCTQCAHSVSTLDFDAKAGNLRTQAATAINAHATQAHHAPLIISPSDSQQRTWRA
Ga0187865_100061031	F002611	GAG	MKFTCTQCAHSVSTVDFDAKAGNLRTQAAAAINAHATQAHHAPLILSPSDSQQRTWR

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