Basic Information | |
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Taxon OID | 3300018004 Open in IMG/M |
Scaffold ID | Ga0187865_1000722 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 43440 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (71.79%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000359 | Metagenome / Metatranscriptome | 1236 | Y |
F000372 | Metagenome / Metatranscriptome | 1220 | Y |
F000985 | Metagenome / Metatranscriptome | 813 | Y |
F012097 | Metagenome / Metatranscriptome | 283 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187865_100072215 | F000359 | GGAG | MSGQVILYFDDQADALRFALAAGSVMAGEGTRATDDLVQETARVTRIRLDAANKEKGKQPNPPERVA |
Ga0187865_100072221 | F000985 | AGG | MKNVYEVLRQKELELTRLEKEVEALRVAAPLLSDEKEPLAEAPKPSLTATAPPQPVRIPPVVAAQGATAPARVAGWEEAAKRWP |
Ga0187865_100072232 | F000372 | AGGAG | VTGSGSGVARRWTVIASGLLLLALALVVIYTGPNAFLSPVALVVVAAIGLAALLLQVWFRRDFPNIHSPLWLNVLGIVCAMVALFADYFRMTRRALDLVAFAAVVCFGISGSLILHALRRRVRTPQSTGTE |
Ga0187865_100072236 | F012097 | AGGGGG | VNTLREFLAETPAAAEQPRVTPIREQVPRKVVSPAASVHDDQIHALVQQLFFRHESKPVRHVGFVTVEASTETATLCLEVARVLAEEGRYDVGLIDAHPDSIPLQTQLQISSASRAEATWLIAPRLWMVPRQSWLPDACGPRITDQNLSRLRELTTEFDFSILWCAPVSWLTTSIGQTCDGLVLVLAANKTRRLVAAQIKDQLSRAQVPLLGTVLAERRFPVPQGLYRSL |
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