NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187878_1018576

Scaffold Ga0187878_1018576


Overview

Basic Information
Taxon OID3300018005 Open in IMG/M
Scaffold IDGa0187878_1018576 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3742
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F016632Metagenome / Metatranscriptome245Y
F028392Metagenome191Y
F098482Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187878_10185761F098482N/AQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLPHFAATDRGAVMFVHLGFAASPDGTPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQVVATPTQAMAIDDGDTLFDRHPEVERYDDEYIIRMVVDARDGQMGIGCVVNAIVWFNLLWLNRTSILAQLRAMEPSTKVLEAIRWMELDLPNSQMPMIASRLEEIIDSIKMNGKSVEWANGVIKEFRDTCPVAPKFWWQGGFQGQGRIPRNRLAIYNEPIPVTTAMDVAHEEWVALFKKARKFADKESWKRCWRVPLEIRTFPTRSEAATAARDFWHLYNRTREAKKAEFLKAGKDHRGKRVSNEQEAGLAAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMARAAGVTRKYVPITWESDRVRADYGHLNLDVIVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLVATEDDNDAPSQAPSVALPAVNGFEQRLKDITLKQQDRQKIEEELKLFRDQVGQRVTIKPVVYHNPKTRQDEPAAQVFLEGKPEPLCWISRDHVSAVTRELTGILVSNGKYSLTAICTLPN
Ga0187878_10185762F028392AGGAGGMPDTIAVIHLPEALRNGNSALVKLAGKVDSFSLALQRTPECQLKHQVEKEYHAMVFATRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEPGDLGKPPQPKRGKLCRQCCFFLGEPEEQVAGIAVTGSPRHLAPAN
Ga0187878_10185763F003859AGGAGMDELNSPREASRCGMTVAAYLRPVTGLYKSVKLGWNWRRLRWAVAAASEAAQGHEANGVRPGSQEFKTLYNEVVKKVEEYSRESGDPIDTLKAKLPALCAIERLANPEPAVPQNKLGLTLGIVIAAVLGSVGMGVLIGLGTGMAHWIAHLFA
Ga0187878_10185764F016632AGGAGGLTGVLETFALVEIGSAIGFLANWRNKVLKTKVNFFRQPNNRPSPFDKVLRGKVGRAVTRQDRLRLQLADGLVNLIRKLVLYEAFRQVVRGLALAHSPMRKALRKKGGRPW

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