Scaffold Ga0187804_10026782

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187804_10026782

Scaffold Ga0187804_10026782

Overview

Basic Information
Taxon OID	3300018006 Open in IMG/M
Scaffold ID	Ga0187804_10026782 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2146
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001747	Metagenome / Metatranscriptome	643	Y
F085029	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187804_100267822	F085029	GGAGG	MKRLPVLASIVLIGFGLGLAATAWPQKTSPALSDHERERRSFAVNLVRAIQKAQVDFKSKHAIYGNWDSLLGNGYFTSTGTKWASPEFPTVGQALYGSGPEIVPGWKLRLNISHSGAAYDLLLEDAMDPKCGYAALTDERGTIRQARSVECPIQ
Ga0187804_100267824	F001747	AGGAGG	MSISPNVPEPQESYHYEHLGTPRWIIVLFIVLVVALGLLAYAGYSIQTRLQQELAKSDEQGKILTAQLDHANARLAELKGQLDVT

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