NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187804_10194247

Scaffold Ga0187804_10194247


Overview

Basic Information
Taxon OID3300018006 Open in IMG/M
Scaffold IDGa0187804_10194247 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038170Metagenome / Metatranscriptome166Y
F077087Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0187804_101942471F038170N/AMRTRAKNPDAFDSQDFLDFARVYLSEAFPNPDRQGCPPDAGLQSLALNPNKSEPAVTEHMAGCSPCFRRYGELLSELKSQREKEKGFIWGRLSVWTKTHPVLTGTAALCLLLIAIGVGLWLHGLRQPNSPPMETNRKPNPTEPLNPTVAYLPFSLDLSALSPVRGSESPTGTQRRVSVPRSPLDMTLTLPLASPEGHYDLKLIAGSETVWSKSAQAH
Ga0187804_101942472F077087N/ADEVLTRCDPMTREMFYRRIQGFSWKEIASSYGISKHAAESRFGQALRKIAKKLGLKNDFRIMGNTSKRF
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