NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187805_10036944

Scaffold Ga0187805_10036944


Overview

Basic Information
Taxon OID3300018007 Open in IMG/M
Scaffold IDGa0187805_10036944 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2182
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016552Metagenome / Metatranscriptome246Y
F065592Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0187805_100369441F016552AGGAMIRSKIAMGLLWALLALALHVWPGAVAPAHAQGTRKDDIVFNSRGIPLAGATVRVCAMPATGQPCTPLALIYSDSGLTQALANPTTTDGMGNYFFYAAPGQYEIEISGPQITTKQIPNVVLPNDPSSPTFSGAVSAFSLSLSGNLTVNGSTTVIGNLASGTLNLANQSTPPGAANSGTVNLYTKTADKRLYYKDDTGAEIGPLGPGTGAQTNAVNTFTAAQNLDNGLHIKGPDPYNDLARYGGYFNNAPPSTTASCTNSSTSVTLA
Ga0187805_100369444F065592N/AYLKAYPDFTDSTSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVIAAVRREQQSARRRRPFSARSGYTPF
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