NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187805_10077354

Scaffold Ga0187805_10077354


Overview

Basic Information
Taxon OID3300018007 Open in IMG/M
Scaffold IDGa0187805_10077354 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1499
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001548Metagenome / Metatranscriptome673Y
F028922Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0187805_100773541F001548GGAGGMHPVRAILWTMAMAYSGFLLTGQGLRTFNSLSITEAFLGALTGFLLAIMFTLRERRRQRPAVVTYPMEQIFPNWGKSRENGGSHPKPKG
Ga0187805_100773542F028922AGGAGGMSPLVRRPILKKFLIVVSCTFAVCVSTKLALAQHPAARNAGGVVHISAPPISHVPISSAPIIHAPIIYAPISTPRISTTPSADALGTAVVRFPRRPIRRFPPVLVVYESPSFLGGPFWGLNSCWWATCDLFWSWTLGYTTVSSPGPTNYISQVNETPVYVYGEERPDLPQLFLKDGTILSVTDYWVFDDQLHFTMIEENGTKPAEHVVPFDALDLQTTVDANTRRGFRFMLRNEPLQQYLRDHPEGPPPIVTPPR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.