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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018008 Open in IMG/M |
| Scaffold ID | Ga0187888_1000295 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 53583 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (82.69%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001118 | Metagenome / Metatranscriptome | 773 | Y |
| F007481 | Metagenome / Metatranscriptome | 350 | Y |
| F024629 | Metagenome / Metatranscriptome | 205 | Y |
| F044615 | Metagenome / Metatranscriptome | 154 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187888_10002952 | F007481 | GAG | MGELPNANGPLDERLRRALNKIKKPSSAEEITGLVNRDLGPKDRPFQVGEVSTWLRNAGDNILNLYWLESRPRR |
| Ga0187888_100029522 | F024629 | AGGAGG | MQDKNLKFCMDQLRSLQNRDGLEPELRSELEKAMEELRRLWRKPNPCRRDVYRAVRRVAEAILTTFKK |
| Ga0187888_10002953 | F001118 | N/A | MGVTAELQNLGDARLSKEIAASIEHALSDRRGDWRVTIAGSRASENWEMRVEGPNGFERAYTLSGAAGEHEPEAIRRLIVQLIPRSSS |
| Ga0187888_100029546 | F044615 | GAG | VPSRLRDGSPTSAALAEKVQAILNNEELTLYRVSQQSAQLYGRSSPYFLPHNLYYDLRAGSFRPSIHQIWALSRISGYRVADWLRVFGYNLEDITRLQVLLPSKRTIVLDTSFTDPNEWVPWLDNRPVGVSMASIVPLAKLLREAPARQIGLLQDPSARRFLYAKIGREDAFAFPDLAPGSIVRVNPDTVDSPALRENFSISDRIFLVEHSKGFCCCRIRVLGNGVIVPVDDGLRYAQVELHCPQEARLRGVVDLEFRPLLRSEEPEVPRDLARHWKPQPLAVEEGFGQVLGGARARMNLSLREAAATSRAITEILKHDRYTISPSSFCDYELRNTPPRDFHKIITLCSLYGLQFQSLLKRLGIAVEEAGTQSIPDRYLSRPTHIAVGESAADEESVHTGFLGQLLQQFQEIPFFLRDSLGWFSPSGHVSLDDFFWIGGEGNPLHPYLENGLLVLVNRRRKTPFHFASKPVWQQPVHIILKRDGTYLAACCGAEDGTLVVHPYTQNFHRTTRFRHHLDAEVVGQIVAIVRRV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |