NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187888_1003804

Scaffold Ga0187888_1003804


Overview

Basic Information
Taxon OID3300018008 Open in IMG/M
Scaffold IDGa0187888_1003804 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11547
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007465Metagenome / Metatranscriptome350Y
F009513Metagenome / Metatranscriptome316N

Sequences

Protein IDFamilyRBSSequence
Ga0187888_10038047F007465AGGAGMPSTESKTKPNSSVATDPSTMMASFWTQWLEQSSRGTQALLEAMQTVGDPQQIQRRWLDAVSQSLDDFMRTPTFLELLGNNLKTITDLKGMQDEVIQDTARHFGLPLAADITGLFERLHSTEQNILKRLQAIEERLKGIETKH
Ga0187888_10038049F009513GGAGGMFDMILENYRKATESTMKLQQDVLRNWTMQWPQMFGAQTFGLPFLGGPASTSAMPGAAWLEQLRDAQKKWSETVTDMLNKHRESLDAQYKAGIRTIEDAFKVGEAKDPQQFRRLTEELWKHSFECLKTVAESQTRDVQAAMEKFYEVASKSATGLKV
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