NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187860_1283598

Scaffold Ga0187860_1283598


Overview

Basic Information
Taxon OID3300018014 Open in IMG/M
Scaffold IDGa0187860_1283598 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004301Metagenome / Metatranscriptome444Y
F026465Metagenome197N

Sequences

Protein IDFamilyRBSSequence
Ga0187860_12835981F004301GGAGMTAMQFSLFDARPSAATVGMEPSVNARNAKRQLDSLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPAEEPVYRLGSYPLKVMRWIRHLIFTLNAERRDVLSAIADLE
Ga0187860_12835982F026465N/AYDTVKKELRRMKNKAEADAAAATFREGRDILARADVRGSLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
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